Institut Pasteur
Biomics
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Metagenomics of protists from French soils

Status: Data analysis

Project ID: B17336

Owner: Laurent Palka

Unit: Other — CESCO Centre d'Ecologie et des Sciences de la Conservation

Experiment type: To be determined

Location: MNHN, 43 rue Buffon, 75005 Paris

Description

This new project follows on from Biomics 7214, a metagenomic inventory of protists in French soils, and is part of a collective project for a taxonomic inventory of biodiversity in French soils, initiated and funded by the French Office for Biodiversity (OFB) and led by INRAE Orléans. Project 7214 was a pilot study involving 30 environmental DNA extracts from 30 sites in mainland France (29 + 1 to come). Sequences obtained using the standard procedure (chained PCR) were of average quality. Of the 32,316 ASVs obtained, the vast majority had very few reads (

Submitted: 2023-09-11 07:24 · Last updated: 2025-12-02 12:26