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#4917 : ChIP-sequencing of transcription factors modulate biofilm formation in Candida albicans
Topics: Epigenetics (ChIP-Seq)
Origin: IP
Project type: Service

Name of Applicant: Laxmi Rai
Date of application: 07-01-2021
Unit: Fungal Biology and Pathogenicity
Location: Fernbach, 4th Floor
Phone: 0145688205
@ Mail: laxmi.rai@pasteur.fr
@ PI-Mail: christophe.denfert@pasteur.fr

Project context and summary:

Candida albicans is primarily a fungal commensal of the human gastro-intestinal and genital tracts and yet, responsible for superficial or disseminated, often deadly infections. Like many other microorganisms, C. albicans also survives in a community, such as biofilm. From an ORFeome collection composed of 5099 ORF cloned in a GatewayTM donor vector (Legrand et al. 2018), and representing 83% of total annotated coding sequences of C. albicans, we constructed 2451 barcoded doxycycline-inducible over-expression strains. We utilized this collection to identify genes that modulate biofilm formation in C. albicans.
In this study, we identified several genes whose over-expression results in impaired biofilm formation. To understand the mechanism, we are interested in finding the targets of key biofilm regulators emerged from this study by performing ChIP-sequencing.
This study is the continuation of Biomics project #4003.


Related team publications:
Systematic gene overexpression in Candida albicans identifies a regulator of early adaptation to the mammalian gut Cell Microbiol, 2018 Nov;20(11):e12890. doi: 10.1111/cmi.12890.
A Recently Evolved Transcriptional Network Controls Biofilm Development in Candida albicans, Cell. 2012 Jan 20; 148(1-2): 126–138
Recording of DNA binding events during gut commensalism reveals the action of a repurposed Candida albicans regulatory network, doi: https://doi.org/10.1101/2020.06.24.169920
Service Delivery
Manager: thomas.cokelaer@pasteur.fr
Status: Closed


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