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#4549 : PHINDaccess _ TransLeish_ DNAseq
Topics: Genomics (PacBio/Long Read)
Origin: RIIP
Project type: Consortium

Name of Applicant: DHAFER LAOUINI
Date of application: 14-10-2020
Unit: Other
Location: Institut Pasteur de Tunis. 13, place Pasteur. BP74. 1002 Tunis-Belvedere. Tunisia
Phone: +21697538319
@ Mail: dhafer.laouini@gmail.com
Collaboration with:

Project context and summary:

Leishmania (L.) parasites are obligate intracellular pathogens that affect millions of people worldwide. Human cutaneous leishmaniasis (HCL) is the most common form of the disease worldwide and represents a serious public health problem. In Tunisia, three forms of LCH coexist: i) the so-called “zoonotic” HCL caused by L. major, ii) the chronic form of the disease caused by L. killicki (syn. L. tropica), and iii) the sporadic form of LCH caused by L. infantum.

L. major and L. infantum forms of LCH have a relatively fast incubation and healing period, while the L. killicki (syn. L. tropica) form occurs as very inflamed nodules and erythematous plaques, healing in about one to two years.

Although HCL is a relatively well-characterized disease, studies aiming at deciphering at the genomic level, determinants that could explain the wide range of clinical expressions of the infections caused by the different parasite species, constitute a still poorly explored field of investigation.

This project aims to perform a de novo sequencing of Leishmania parasites HCL clinical isolates obtained from Tunisian patients lesions, relying on the power of the cutting-edge generation of high throughput de novo sequencing techniques to decipher the peculiarities of these genomes.


Related team publications:
Bettaieb J, Toumi A, Ghawar W, Chlif S, Nouira M, Belhaj-Hamida N, Gharbi A, Ben-Alaya N, Laouini D, Louzir H, Dellagi K, Ben Salah A. A prospective cohort study of Cutaneous Leishmaniasis due to Leishmania major: Dynamics of the Leishmanin skin test and its predictive value for protection against infection and disease. PLoS Negl Trop Dis. 2020 Aug 25;14(8):e0008550. doi: 10.1371/journal.pntd.0008550. PMID: 32841284; PMCID: PMC7473511.
Bussotti G, Gouzelou E, Côrtes Boité M, Kherachi I, Harrat Z, Eddaikra N, Mottram JC, Antoniou M, Christodoulou V, Bali A, Guerfali FZ, Laouini D, Mukhtar M, Dumetz F, Dujardin JC, Smirlis D, Lechat P, Pescher P, El Hamouchi A, Lemrani M, Chicharro C, Llanes-Acevedo IP, Botana L, Cruz I, Moreno J, Jeddi F, Aoun K, Bouratbine A, Cupolillo E, Späth GF. Leishmania Genome Dynamics during Environmental Adaptation Reveal Strain-Specific Differences in Gene Copy Number Variation, Karyotype Instability, and Telomeric Amplification. mBio. 2018 Nov 6;9(6):e01399-18. doi: 10.1128/mBio.01399-18. PMID: 30401775; PMCID: PMC6222132.
Ghouila A, Guerfali FZ, Atri C, Bali A, Attia H, Sghaier RM, Mkannez G, Dickens NJ, Laouini D. Comparative genomics of Tunisian Leishmania major isolates causing human cutaneous leishmaniasis with contrasting clinical severity. Infect Genet Evol. 2017 Jun;50:110-120. doi: 10.1016/j.meegid.2016.10.029. Epub 2016 Nov 4. PMID: 27818279; PMCID: PMC5376240.
Service Delivery
Manager: imene.najjar@pasteur.fr
Status: Closed


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