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#18084 : DECOLeishRN: Decoding epistatic genome/RNome interactions in eukaryotic fitness gain using Leishmania parasites as a unique model system
Topics: Others
Origin: IP
Project type: Collaboration

Name of Applicant: Gerald Spaeth
Date of application: 12-03-2024
Unit: Molecular Parasitology and Signaling
Location: Calmette 2nd floor (62-02-17A)
Phone: 0786281484
@ Mail: gspaeth@pasteur.fr

Project context and summary:

Exploiting the unique biology of the protozoan parasite Leishmania as a model system, the ERC project DECOLeishRN will generate unprecedented insight into the role of genome instability in eukaryotic adaptation by combining experimental evolution, analyses of the non-coding RNA, network modelling and cutting-edge, single cell sequencing. The project aims to uncover the molecular filter that can mitigate toxic effects of genome instability while promoting beneficial ones, thus resolving a long-standing question in infection and cancer biology. We expect to reveal complex and dynamic interactions between genomic, epitranscriptomic and phenotypic adaptation of these important parasites that compensate for detrimental gene dosage changes. The study of pathogen evolution in culture and within a mammalian host will provide an innovative framework for the discovery of complex biomarker candidates linked to Leishmania virulence and drug resistance. Exploiting genome instability for adaptation is common to other diseases-causing microbes and cancer. This project will thus deliver a blueprint to study how chaotic genome instability is harnessed for adaptation and to escape unfavorable environmental conditions.


Related team publications:
Bussotti G, Li B, Pescher P, Vojtkova B, Louradour I, Pruzinova K, Sadlova J, Volf P, Späth GF. Leishmania allelic selection during experimental sand fly infection correlates with mutational signatures of oxidative DNA damage. Proc Natl Acad Sci U S A. 2023 Mar 7;120(10):e2220828120. doi: 10.1073/pnas.2220828120. Epub 2023 Feb 27. PMID: 36848551; PMCID: PMC10013807.
Piel L, Rajan KS, Bussotti G, Varet H, Legendre R, Proux C, Douché T, Giai- Gianetto Q, Chaze T, Cokelaer T, Vojtkova B, Gordon-Bar N, Doniger T, Cohen-Chalamish S, Rengaraj P, Besse C, Boland A, Sadlova J, Deleuze JF, Matondo M, Unger R, Volf P, Michaeli S, Pescher P, Späth GF. Experimental evolution links post-transcriptional regulation to Leishmania fitness gain. PLoS Pathog. 2022 Mar 16;18(3):e1010375. doi: 10.1371/journal.ppat.1010375. PMID: 35294501; PMCID: PMC8959184.
Bussotti G, Piel L, Pescher P, Domagalska MA, Rajan KS, Cohen-Chalamish S, Doniger T, Hiregange DG, Myler PJ, Unger R, Michaeli S, Späth GF. Genome instability drives epistatic adaptation in the human pathogen Leishmania. Proc Natl Acad Sci U S A. 2021 Dec 21;118(51):e2113744118. doi: 10.1073/pnas.2113744118. PMID: 34903666; PMCID: PMC8713814.
Service Delivery
Manager: marc.monot@pasteur.fr
Status: Sequencing


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