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#17451 : Better classification of the phylum of Cyanobacteria
Topics: Genomics (Long Read)
Origin: IP
Project type: Expertise

Name of Applicant: Muriel GUGGER
Date of application: 06-10-2023
Unit: Collection of Cyanobacteria
Location: 12-04-05A
Phone: 0145688416
@ Mail: muriel.gugger@pasteur.fr

Project context and summary:

In the frame of a collaborative project to properly assign names and classification of cyanobacteria, we have undertaken the sequencing of the cyanobacteria of the collection Pasteur Cultures of Cyanobacteria. We sequenced about 400 strains and performed the first tree analysis. During this analysis, some genomes appeared to be frankly overcut, or under the expected size. We aim in this project to sequence 48 strains that we suspect to be of too bad quality to be released as such. As the technologies for library and sequencing have evolved a lot since our first round of sequencing, we aim to establish with nanopore technology better genomes for these strains that might represent species references for new taxon.


Related team publications:
Service Delivery
Manager: chloe.baum@pasteur.fr
Status: Sequencing (High Throughput)


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