How to interpret the fastqc, multiqc and output of sequana_fastqc and sequana_demultiplex pipelines
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Catching up with tasks and projects
Here is an update of the open projects (green) and closed projects during the last 6 months (sept 2019 to feb 2020). This was a hard time. We were still in the process of catching up with projects (march-sept 2019) when 2 engineers left the platform and only one replaced …
read moreCatching up with tasks and projects
Managing multiple projects is a hard task. Within the Biomics Platform, we manage about 200 projects a year. Within the SALSA group, we deal with various daily tasks and issues: analysing genomic data, helping users in solving their sequencing problems, working with the wetlab, managing our submission website, etc. Overall …
read morePymix software
a mixture model implementation in Python
read moreAbyss 2.0
ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter
read moreSending large data files
How to send or receive large file
read moreDemultiplexing your data: The SampleSheet
How to design or debug your samplesheet.
read moreExample of Pacbio Assembly
Here is an example of a Pacbio Assembly we did recently on a bacterial genome. Following the generation of the data at the Platform, the SALSA group applied some standard and less standard analysis to produce this 1-contig assembly. This type of analysis is now quite standard within the platform …
read moreDemultiplexing your data
How to demultiplex your BCL data from the NextSeq or ISeq100 runs ?
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