Damona library

Overview

This is the entry point to some damona singularity files. We currently have a few containers to demonstrate the usage and to serve the purpose of the Sequana project. Damona is a singularity environment manager, not a repository for singularity containers, which can be found in various communities such as the biocontainers.pro registry.

For more information about Damona please see documentation and the github repository.

The goal of damona is to manage singularity files like conda manages pre-compiled packages. Here, to install fastqc v0.11.9 you would simply type:

damona install fastqc:0.11.9

This command downloads the container and create binaries on the fly. Binaries will then be available in your PATH. You can manage several environments

damona env --create mytest

and activate it as follows

damona activate mytest

Examples

Here are the singularity images available from this server but more are available in Damona itself.

art_2.5.8.img (size 340Mb)
art_3.11.14.img (size 339Mb)
bcl2fastq_2.20.0.img (size 77Mb)
fastqc_0.11.8.img (size 198Mb)
fastqc_0.11.9.img (size 198Mb)
fitter_1.3.0.img (size 455Mb)
quast_5.0.2.img (size 1399Mb)
rnadiff_1.7.1.img (size 977Mb)
salmon_1.3.0.img (size 336Mb)
sequana_perl_tools_0.1.0.img (size 595Mb)
sequana_tools_0.10.0.img (size 1677Mb)
sequana_tools_0.11.0.img (size 1682Mb)
sequana_tools_0.12.0.img (size 1371Mb)
sequana_tools_0.9.0.img (size 1422Mb)
trf_4.10.0.img (size 180Mb)
ucsc_0.1.0.img (size 634Mb)